Medicinal Chemistry Senior Principal Research Scientist

vrtx· Vertex Pharmaceuticals Inc (US)
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📍 San Diego, CAFull time💰 USD 164K–247K
Full timeVertex Pharmaceuticals Inc (US)

About this role

Job Description

Vertex is seeking a Senior Principal Research Scientist, Medicinal Chemistry to provide scientific leadership in the design and optimization of small-molecule therapeutics across discovery programs. This role will play a critical part in advancing high-quality drug candidates from early discovery through candidate selection, while partnering across multidisciplinary teams to solve complex scientific challenges.

The ideal candidate is an accomplished medicinal chemist with deep expertise in small-molecule drug discovery, a strong record of scientific innovation, and demonstrated success in a fast-paced and matrixed research environment. This is an on-site role.

Key Responsibilities

  • Lead medicinal chemistry strategy for small-molecule discovery programs aligned with portfolio and project objectives.
  • Design, prioritize, and guide synthesis of novel compounds to optimize potency, selectivity, pharmacokinetics, and developability.
  • Interpret and integrate SAR, structural biology, DMPK, pharmacology, and safety data to drive compound design and progression.
  • Partner closely with biology, DMPK, toxicology, and pharmaceutical sciences to advance program goals.
  • Provide technical and strategic leadership to internal and external chemistry resources.
  • Provide scientific leadership, mentorship, and development support to chemistry team members.
  • Communicate program strategy, data, risks, and recommendations to senior leadership and governance teams.
  • Support intellectual property strategy in partnership with internal stakeholders.

Knowledge and Skills:

  • Specialized depth of knowledge and methods in own field/discipline
  • Ability to consistently advise/mentor others to execute technically challenging, complex experiments that directly impact projects and programs within discipline
  • Ability to consistently identify and leverage new, productive paths/approaches in experiments
  • Demonstrated initiative and ability to impact and advance projects through scientific creativity and insights
  • Assigned to the more challenging or higher-value project tasks/problems
  • Often will have demonstrated outstanding determination and/or persistence in supporting project(s)
  • Strong communication skills with the ability to effectively write advanced technical documents, and ability to persuade others presenting technical/scientific concepts to diverse audiences
  • Values team work and collaboration to solve problems and design strategies

Education and Experience:

  • Ph.D. in Chemistry or related scientific discipline with 6+ years of relevant postdoctoral industry experience; Master’s degree with 9+ years of relevant industry experience; or Bachelor’s degree with 11+ years of relevant industry experience.
  • Significant experience in medicinal chemistry and small-molecule drug discovery.
  • Demonstrated success advancing discovery programs through candidate selection.
  • Experience leading cross-functional and multidisciplinary teams including in matrixed settings.
  • Strong communication, strategic thinking, decision-making, prioritization, and problem-solving skills.

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Pay Range:

$164,400 - $246,600

Disclosure Statement:

The range provided is based on what we believe is a reasonable estimate for the base salary pay range for this job at the time of posting. This role is eligible for an annual bonus and annual equity awards. Some roles may also be eligible for overtime pay, in accordance with federal and state requirements. Actual base salary pay will be based on a number of factors, including skills, competencies, experience, and other job-related factors permitted by law.

At Vertex, our Total Rewards offerings also include inclusive market-leading benefits to meet our employees wherever they are in their career, financial, family and wellbeing journey while providing flexibility and resources to support their growth and aspirations.  From medical, dental and vision benefits to generous paid time off (including a week-long company shutdown in the Summer and the Winter), educational assistance programs including student loan repayment, a generous commuting subsidy, matching charitable donations, 401(k) and so much more.

Flex Designation:

On-Site Designated

Flex Eligibility Status:

In this On-Site designated role, you will work five days per week on-site with ad hoc flexibility.  

Note: The Flex status for this position is subject to Vertex’s Policy on Flex @ Vertex Program and may be changed at any time.

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Company Information

Vertex is a global biotechnology company that invests in scientific innovation.

Vertex is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, sexual orientation, marital status, or any characteristic protected under applicable law. Vertex is an E-Verify Employer in the United States. Vertex will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law.

Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should make a request to the recruiter or hiring manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com

Frequently Asked Questions

What is the salary for the Medicinal Chemistry Senior Principal Research Scientist role at vrtx?
The listed salary for this Medicinal Chemistry Senior Principal Research Scientist position at vrtx is USD 164K–247K. This is an Full time role.
Where is the Medicinal Chemistry Senior Principal Research Scientist position at vrtx located?
This Medicinal Chemistry Senior Principal Research Scientist role at vrtx is based in San Diego, CA. The position is listed as on-site or hybrid. Check the full job description or apply directly to confirm the work arrangement.
Is the Medicinal Chemistry Senior Principal Research Scientist role at vrtx full-time or part-time?
This is listed as a Full time position. It is posted as a Medicinal Chemistry Senior Principal Research Scientist role in the Vertex Pharmaceuticals Inc (US) department at vrtx.
Which team or department does the Medicinal Chemistry Senior Principal Research Scientist at vrtx belong to?
This Medicinal Chemistry Senior Principal Research Scientist position is part of the Vertex Pharmaceuticals Inc (US) department at vrtx. See the full job description for more information about the team structure and responsibilities.
How do I apply for the Medicinal Chemistry Senior Principal Research Scientist position at vrtx?
Click the "Apply Now" button on this page. You will be redirected to vrtx's official application portal hosted on workday where you can submit your application directly.
When was the Medicinal Chemistry Senior Principal Research Scientist job at vrtx posted?
This Medicinal Chemistry Senior Principal Research Scientist position at vrtx was posted on Aug 29, 2026. Apply as soon as possible — early applications are often reviewed first.
Medicinal Chemistry Senior Principal Research Scientist
vrtx · 💰 USD 164K–247K
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